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A Python Project Structure That Scales With Your Application

Sritharan K
September 25, 2025
4 min read

One of the biggest differences between junior and senior Python developers is how they structure projects. As applications grow : especially APIs, microservices, and automation systems : a clean and scalable project layout becomes essential.

Here's a practical, production-tested structure I use across FastAPI, Django, and custom Python services.

Recommended Directory Structure

What each folder does:

  • api/ → routers, controllers, endpoints
  • core/ → settings, constants, utils, middleware
  • models/ → ORM models (SQLAlchemy, Django)
  • services/ → business logic, integrations, workflows
  • schemas/ → Pydantic or serializer models
  • tests/ → unit & integration tests
  • scripts/ → ETL, maintenance tasks
  • config/ → env files, deployment config, logging config

This separation scales very well as the project grows.

Why This Structure Works

✔ Clear boundaries

Business logic (services) stays separate from API routes.

✔ Easy testing

Each layer is isolated → reliable unit tests.

✔ Reusable components

Services and schemas can be imported across multiple projects.

✔ Reduced coupling

You can switch frameworks or ORMs without breaking core logic.

✔ Friendly for CI/CD & Docker

Clean directories → clean docker images → faster pipelines.

Bonus: Add Domain Layer for Complex Systems

For large enterprise systems:

This creates even cleaner architecture following DDD principles.

Final Thoughts

A good project structure isn't just about organization : it directly impacts maintainability, scalability, and developer happiness. By separating API, services, models, and domain logic, your Python application becomes easy to extend and ready for long-term growth.

Planning a complex Python or FastAPI migration? I specialize in auditing and executing large-scale backend transformations.

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A Python Project Structure That Scales With Your Application | Sritharan K. | SKengineer